For more information

Dept. of Dermatology
Mail Code: L468R
Oregon Health & Science University
3181 SW Sam Jackson Park Rd.
Portland, OR 97239

Office: (503) 418-4273
Fax: (503) 418-4266

info(at)
montagnasymposium.org

Molly Kulesz-Martin, Ph.D.
Symposium Director

David Norris, M.D.
Jackie Bickenbach, Ph.D.
Symposium Director Emeriti

Looking for meeting photos and updates? Follow the Montagna Symposium on Facebook
Facebook

Browsing Human Epidermal Gene Expression Using

SCARAB

SCARAB (Single-Cell Analysis of RNA Browser)

allows you to browse data from the Cell Reports Cheng et al manuscript "Transcriptional programming of normal and inflamed human epidermis at single cell resolution." This work was first presented at the 2017 Montagna Symposium Precision Dermatology: Next Generation. Prevention, Diagnosis, and Treatment.The displayed transcript abundance data is derived from more than 80,000 epidermal cells profiled from 12 samples representing foreskin, trunk, scalp, and psoriatic epidermis, using the 10X Chromium single-cell RNA sequencing platform. UCSF epidermal single-cell studies were partially made possible by the generous support of Janet L. Maldonado, Steven Juno, and Vera Price.

A simple way to begin:

is to assign your gene of interest to the y-axis and either KRT5 or KRT10 to the x-axis. This gives an approximation of the evolution of gene expression through the epidermis in either a basal or differentiated direction.

Cell Reports
UCSF

We're deeply committed to making this data easy to use and understand for epidermal biologists. If you have any questions or suggestions, please don't hesitate to contact us at jeffrey.cheng@ucsf.edu

SCARAB is hosted by NantOmics. See SCARAB Homepage for fullsize browser

Learn more about the Biology of Skin Foundation! https://biologyofskinfoundation.org/